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University of Veterinary Medicine Vienna

Workstations for image processing and analysis

We currently provide 4 workstations for various imaging-related applications including image processing, 3D visualization and analysis, and deconvolution of epifluorescence and confocal images. The workstations are located in our microscopy room and like the imaging equipment they can be booked via an online calendar. Workstations meet hardware requirements of computationally intensive applications such as 3D rendering or deconvolution.

Hardware

CPU: Intel(R) Core(TM) i7-4770 CPU @ 3.40GHz
GPU: NVIDIA GeForce GTX960
RAM: 32GB

Software

Windows 10 Education
IncuCyte with IncuCyte PlateMap
FIJI
Nikon NIS-Elements Viewer
ZEN 2 Viewer
Evident OlyVIA
3DHistech SlideViewer

Hardware

CPU: Intel(R) Xeon(R) w9-3475X
GPU: NVIDIA RTX A6000
RAM: 512 GB
Wacom Tablet Cintiq 22HD (shared with WS 3)

Software

Windows 10 Education
Evident Desktop with TrueAI
Python (Anaconda)
QuPath
Ilastik
FIJI

Hardware

CPU: Intel(R) Xeon(R) w9-3475X
GPU: NVIDIA RTX A6000
RAM: 512 GB
Wacom Tablet Cintiq 22HD (shared with WS 3)

Software

Windows 10 Education
Amira 2022.1
FIJI
Matlab R2019b
Zeiss ZEN 2 Viewer
3DHistech CaseViewer / CaseConverter

Hardware

CPU: Intel(R) Core(TM) i5-6600K CPU @ 3.50GHz
GPU: NVIDIA Quadro M4000
RAM: 64 GB
Tape drive: HP LTO Ultrium-6

Software

Windows 10 Education
Adobe Creative Cloud
FIJI
Nikon NIS-Elements Viewer
VGStudio Max
SPSS
Zeiss ZEN 2 Viewer

Hardware

CPU: Intel(R) Xeon(R) CPU E5-1650 v3 @ 3.50GHz
GPU: NVIDIA Quadro P5000
RAM: 128 GB
 

Software

Windows Server 2022
Arivis Vision 4D
Huygens Suite
Ilastik
FIJI
Nikon NIS-Elements Viewer
Zeiss ZEN Viewer
Evident OlyVIA Viewer

Microscopes directly connected to the Hive
(fibre glass or CAT7 high speed connection)

Zeiss LSM 880
Nikon Eclipse Ti-2 Spinning Disk

Software
We provide both commercial and non-commercial software for various applications of image processing and analysis. The software packages can be used for routine image processing (ImageJ, Photoshop), deconvolution (Huygens), for processing and visualizing 3D images (Amira, Drishti), and for designing scripts or macros for automated analysis (MATLAB, ImageJ).

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